PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08495A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 133aa    MW: 14468.3 Da    PI: 8.3303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08495AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006994114121
                                EEETTTTEEESSHHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                                +kC+ C+k+F +   L  H++
  Oropetium_20150105_08495A  94 HKCKLCSKVFASGKALGGHMK 114
                                79**********999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.7E-1093114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
YGLRDRRHRT WLLCDSSDDQ EIEDLTLVPK TECQLCFKRD SNSGYQVQES KVGLDCSSHG  60
QFGDDKPTKP ENCSSDGRMK FSSLSGVLKA TAVHKCKLCS KVFASGKALG GHMKASQGSC  120
TWKSSSIPQL CS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08495A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.14e-07C2H2 family protein