PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08481A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 25512.7 Da PI: 7.3162 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95 | 8.4e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g+ Oropetium_20150105_08481A 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLQHRPALFRSLLYEACGRTINPVSGAIGL 85 6*********************9999888899**************************************************** PP DUF260 80 ilklqqqleqlkaelallke 99 +++++++l+q++ae++l+++ Oropetium_20150105_08481A 86 MWTGNWDLCQAAAEAVLRGD 105 **************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.88 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-24 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLQHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGDSLRAL SAIPAAFTDR 120 DMAGLYGNVG AAGAASSSSP DHSSSAPPAS RKRKYRKDDD DCHNRHRQNQ QPPPPEAAGL 180 LLQLPSSCEL HLGLTTPASP QARRPLGCGG ASDEYSATTT CEDAAGGDAA EAGGAPPTLL 240 NLFIN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 157 | RKRKYRKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08481A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288002 | 1e-164 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628211.1 | 1e-105 | LOB domain-containing protein 38 | ||||
Refseq | XP_020177395.1 | 1e-105 | LOB domain-containing protein 39-like | ||||
TrEMBL | A0A3B6HV18 | 1e-105 | A0A3B6HV18_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4AL_7241716B6.1 | 1e-105 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8450 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 3e-56 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08481A |