PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08454A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 107aa MW: 12389.5 Da PI: 10.3031 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.3 | 8.7e-16 | 36 | 103 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++ + ++ + ++W+ k+ y ++++ +l +GW +F+++ngL++gD+++F+l ++ ++ +++v++++k Oropetium_20150105_08454A 36 AKG-ETMVLQCGRKVWKTKMMYHTGRRW-TLDGGWPQFARENGLRVGDICLFELRKNkRKLTMRVHIISK 103 344.455566688*******77776655.79***********************99999999***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.9E-4 | 8 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.01E-17 | 17 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 17 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.10E-14 | 27 | 99 | No hit | No description |
Pfam | PF02362 | 7.7E-14 | 28 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.364 | 48 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MNSRNWLDDQ KDIEPGSLLC CYSALGSRYA SVHLPAKGET MVLQCGRKVW KTKMMYHTGR 60 RWTLDGGWPQ FARENGLRVG DICLFELRKN KRKLTMRVHI ISKEQF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08454A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685567.1 | 2e-36 | B3 domain-containing protein Os03g0619600-like | ||||
Refseq | XP_025797619.1 | 8e-36 | B3 domain-containing protein Os03g0619800-like isoform X2 | ||||
Refseq | XP_025797620.1 | 4e-36 | B3 domain-containing protein Os03g0619800-like isoform X3 | ||||
Swissprot | Q6AV22 | 1e-17 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A0A9EDT2 | 9e-40 | A0A0A9EDT2_ARUDO; Uncharacterized protein | ||||
STRING | Si037821m | 2e-36 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-08 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08454A |
Publications ? help Back to Top | |||
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