PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_08447A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 337aa MW: 36734.6 Da PI: 7.5502

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_08447A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.2	1.1e-55	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv++yL++k+++ +++ ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk Oropetium_20150105_08447A 5 LPPGFRFHPTDEELVTYYLTRKASDFAFTT-RAIADVDLNKCEPWDLPGKASMGEKEWYFFSMRDRKYPTGIRTNRATDSGYWK 87 79***********************999.89***********988999************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkdke+++ g lvg+kktLvfy+grapkgekt+Wvmheyrl Oropetium_20150105_08447A 88 TTGKDKEIFH-CGMLVGMKKTLVFYRGRAPKGEKTSWVMHEYRL 130 ******.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	5	151	IPR003441	NAC domain
Pfam	PF02365	6.2E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEEGLPPGFR FHPTDEELVT YYLTRKASDF AFTTRAIADV DLNKCEPWDL PGKASMGEKE 60 WYFFSMRDRK YPTGIRTNRA TDSGYWKTTG KDKEIFHCGM LVGMKKTLVF YRGRAPKGEK 120 TSWVMHEYRL QNKFPYKPNK DEWVVCRVFK KCQVIKMRPP TGSPTMDSPC HDANNASLGE 180 LGELDVSSIL GGLAPSSVHT SSSSPAGEGN FVGHRAVDMS AYMSWMAAAN QGAAAAAAAA 240 AMLPWAPGLF GNVFAAAPNQ LGPQKSLQYA AGCSPSHQPR EIIGGVVANL GGGGDHHAMF 300 GSSVAKVDME CDQQQHPPQP PEQQLGMDDS TWRAFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	5	151	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	5	151	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	5	151	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	5	151	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	5	151	20	168	NAC domain-containing protein 19
3swm_B	1e-57	5	151	20	168	NAC domain-containing protein 19
3swm_C	1e-57	5	151	20	168	NAC domain-containing protein 19
3swm_D	1e-57	5	151	20	168	NAC domain-containing protein 19
3swp_A	1e-57	5	151	20	168	NAC domain-containing protein 19
3swp_B	1e-57	5	151	20	168	NAC domain-containing protein 19
3swp_C	1e-57	5	151	20	168	NAC domain-containing protein 19
3swp_D	1e-57	5	151	20	168	NAC domain-containing protein 19
4dul_A	1e-57	5	151	17	165	NAC domain-containing protein 19
4dul_B	1e-57	5	151	17	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_08447A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363171	0.0	AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466794.1	1e-168	protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A1E5WJW1	0.0	A0A1E5WJW1_9POAL; Protein CUP-SHAPED COTYLEDON 2
STRING	Pavir.Ib03976.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-93	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_08447A