PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08384A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LSD | ||||||||
Protein Properties | Length: 141aa MW: 14511.4 Da PI: 9.3495 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 49.5 | 6.7e-16 | 47 | 70 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ Oropetium_20150105_08384A 47 CGHCRTTLMYPYGAPSVKCAICNY 70 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.1E-13 | 44 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.7E-15 | 47 | 71 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MPRVPDRPAL PARGAQRLLR GVPSHHHCPT ASDFHFGAVN NVAHVNCGHC RTTLMYPYGA 60 PSVKCAICNY ITATINAVTP TPSTTAPSNG SSYSASSTSA PKTQPQNVTV VVENPMTVDE 120 KGKLVSSVVV GVTAGSAGKN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08384A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464188.1 | 5e-48 | protein LOL3 | ||||
Swissprot | Q6ASS2 | 1e-40 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | C5WR97 | 1e-46 | C5WR97_SORBI; Uncharacterized protein | ||||
STRING | Sb01g013820.1 | 2e-47 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.6 | 6e-17 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08384A |
Publications ? help Back to Top | |||
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