PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08371A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 119aa    MW: 13319.2 Da    PI: 11.9909
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08371AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox331e-10701151152
                                HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
                   Homeobox  11 qleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52 
                                  e+Le+++ ++++ps  +r++  +++    +++ +q+ vWFqN R
  Oropetium_20150105_08371A  70 RWEALERVYGECSKPSSLRRQQFIRECpilsKIESKQINVWFQNCR 115
                                5689****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-862116IPR009057Homeodomain-like
PfamPF000462.0E-870115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-971115IPR009057Homeodomain-like
CDDcd000865.34E-472115No hitNo description
PROSITE profilePS500719.63772118IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
DSSHPPSRHL SLSLARNLRA GRTARQATAL GPKRPRTDIT TIPWRRAAAL PLQRARVDTR  60
ASTCATPPSR WEALERVYGE CSKPSSLRRQ QFIRECPILS KIESKQINVW FQNCRSGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08371A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9FA046e-18B9FA04_ORYSJ; Uncharacterized protein
STRINGPavir.J24358.1.p6e-19(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1849158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.16e-20HD-ZIP family protein