PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08369A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32819.7 Da PI: 10.2308 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++rWT eE l +v+++G g W++I + + +R+ ++k++w++ Oropetium_20150105_08369A 5 KQRWTSEEKAALRAGVERHGVGKWRAILQDPQfcstlCHRSNVDLKDKWRNM 56 79**********************************999***********96 PP | |||||||
2 | Myb_DNA-binding | 29.9 | 1.3e-09 | 102 | 152 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++WT eE l +v+++G g W+ I + + R+ ++k++w++ Oropetium_20150105_08369A 102 QKWTSEEKAALRAGVAKHGVGKWNVILKDPQfsstlCYRSNIHLKDKWRNM 152 79********************************9978***********95 PP | |||||||
3 | Myb_DNA-binding | 23.4 | 1.4e-07 | 165 | 193 | 2 | 30 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIart 30 +rWT eE+ l +v+++G g W+ I + Oropetium_20150105_08369A 165 QRWTSEEQNSLRAGVAKHGVGKWNVILKD 193 8*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.166 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-15 | 3 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-13 | 5 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.80E-19 | 6 | 57 | No hit | No description |
PROSITE profile | PS51294 | 7.421 | 96 | 157 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-12 | 97 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.13E-14 | 99 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-4 | 100 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.27E-17 | 102 | 153 | No hit | No description |
Pfam | PF00249 | 1.1E-6 | 102 | 152 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.378 | 159 | 209 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-8 | 160 | 208 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3 | 163 | 203 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.32E-11 | 165 | 209 | No hit | No description |
SuperFamily | SSF46689 | 4.06E-8 | 166 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00526 | 2.9E-4 | 219 | 280 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 14.857 | 221 | 286 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.77E-10 | 224 | 281 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-12 | 225 | 281 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 2.1E-9 | 226 | 281 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGPPKQRWTS EEKAALRAGV ERHGVGKWRA ILQDPQFCST LCHRSNVDLK DKWRNMITTA 60 ITSGLRERRR IALREKQSTP ENDDHAMAIS TVTSDVNDKI EQKWTSEEKA ALRAGVAKHG 120 VGKWNVILKD PQFSSTLCYR SNIHLKDKWR NMTSNITSEE KLLEQRWTSE EQNSLRAGVA 180 KHGVGKWNVI LKDPEFCSTL CNRSNIDLKI LGGCFTFVRW LSCRLDNMIM EAIKHLNEPM 240 GSRRTSIANY IKDRYFSSSD LKQLLSAKLK DLATSGKLMK VFFYEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08369A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679422 | 1e-48 | HF679422.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB16 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105670.1 | 4e-49 | single myb histone 6 | ||||
Swissprot | C0HIA3 | 3e-49 | SMH6_MAIZE; Single myb histone 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 3e-37 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08369A |
Publications ? help Back to Top | |||
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