PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08340A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YA
Protein Properties Length: 340aa    MW: 36782.3 Da    PI: 8.9795
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08340AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.34e-31168224158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                d+p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  Oropetium_20150105_08340A 168 DAPIYVNAKQYEGILRRRRARAKAERENRL-VKGRKPYLHESRHLHAMRRARGSGGRF 224
                                68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-34166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.3167227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-23170192IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-28170224IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860172192IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-23201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMSFKNHQEG FGHVAALNQA AYNGGAGAPL PWWAGPQLLY GDPAPLSPPE ETRRDSQFQV  60
VPAPQGSPDP APPPAVPKRG TPPEVLKFSV FQGSSESGGK GDKAQDHSTT IALQSPFPEY  120
NGRFEIGLGQ SSVSPNYPCP DQCYGLLATY AMRSVCGRML LPLNAPADAP IYVNAKQYEG  180
ILRRRRARAK AERENRLVKG RKPYLHESRH LHAMRRARGS GGRFLNTKKK EGHGKETAAN  240
GGNKMAPHVR PCSYSPQLEP GNNQHHCHSR SSGSSGLSGS EASTMYEHDD VDHYHSSIEH  300
LRTPFFTPLP SIMDGEHGVA AIPSFKWAAG DGCCELLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17168231265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A1e-17168226261HAPB protein
4g92_A1e-17168226261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08340A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796559.11e-133nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.11e-133nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.11e-133nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9RWX31e-150A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ib04124.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-24nuclear factor Y, subunit A10