PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08299A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 427aa    MW: 46306.5 Da    PI: 9.7913
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08299AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.97.3e-21326382255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 
                                +r+ W+ +LH+ Fv+av+  GG++ A P ++    e+m+v gLt++++kSHLQkYR 
  Oropetium_20150105_08299A 326 KRMAWSDNLHKIFVQAVAYHGGPHAAKPAALqrtIEAMGVRGLTIHNIKSHLQKYRE 382
                                7***************************876222578*******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000813.1E-187289IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF517356.16E-4872285IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7203.6E-5272276IPR016040NAD(P)-binding domain
CDDcd052331.17E-4973288No hitNo description
PfamPF001061.0E-4273268IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000802.4E-6148159IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.1E-18148159IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000802.4E-6204212IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610212240IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000802.4E-6225244IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.1E-18225244IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.1E-18249266IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466891.52E-11322383IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-18324382IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-17326383IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015996Biological Processchlorophyll catabolic process
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAAGVAAAAR LPLRASARVG APLLTPPLAF GARLPCGLSR RRLACRALSG VRAEEAVSGG  60
GRRREPMVPP YNVLITGSTK GIGYALAKKF LEAGDNVIIC SRSAQKVESV VGDLKKEYGE  120
QHVWGTVCDV RDGKDVKALV EFASDKLKHI DIWINNAGSN AYTYKPLAET SDEALMEVIT  180
TNTLGLMICC REAINMMRNQ PRGGHIFNID GAGSDGRPTP RFAAYGATKR SVVHLTKSLQ  240
AELQMNEVNN VMVHNLSPGM VTTDLLMSGA TTKQAKFFIN ILAEPPDVRL AFGARRNKIM  300
FNNRPARYDD ASYISHMIWA MQPTRKRMAW SDNLHKIFVQ AVAYHGGPHA AKPAALQRTI  360
EAMGVRGLTI HNIKSHLQKY REKCDLGGAG AFDDVPGTTS PSKAALNLMS EMIMDTDAVM  420
AEMELT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3o4r_A5e-19582874230Dehydrogenase/reductase SDR family member 4
3o4r_B5e-19582874230Dehydrogenase/reductase SDR family member 4
3o4r_C5e-19582874230Dehydrogenase/reductase SDR family member 4
3o4r_D5e-19582874230Dehydrogenase/reductase SDR family member 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for chlorophyll b degradation.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08299A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0874480.0BT087448.1 Zea mays full-length cDNA clone ZM_BFb0081C23 mRNA, complete cds.
GenBankEU9520420.0EU952042.1 Zea mays clone 1065831 short-chain dehydrogenase/reductase SDR mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146883.11e-171short-chain dehydrogenase/reductase SDR
SwissprotQ84ST41e-163NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLA0A3L6SBR90.0A0A3L6SBR9_PANMI; Uncharacterized protein
STRINGSb01g013080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-13G2-like family protein
Publications ? help Back to Top
  1. Kusaba M, et al.
    Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
    Plant Cell, 2007. 19(4): p. 1362-75
    [PMID:17416733]
  2. Sato Y, et al.
    Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
    Plant J., 2009. 57(1): p. 120-31
    [PMID:18778405]