PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08278A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 120aa MW: 13004.5 Da PI: 9.4586 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.7 | 1e-22 | 25 | 84 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSS...TTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaed...pkvveitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY++C +++C +kkkve +d ++++ ++Yeg H+h Oropetium_20150105_08278A 25 EDGYQWKKYGQKFIKNIQKMRSYFKCRHQRCGAKKKVEWHPSDaggGDLIRVVYEGAHQH 84 7*************************************9888744469************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-24 | 19 | 87 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.534 | 19 | 87 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-22 | 20 | 87 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-24 | 24 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-21 | 25 | 84 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MASTSNPDAI GEMTGIANHQ LVMPEDGYQW KKYGQKFIKN IQKMRSYFKC RHQRCGAKKK 60 VEWHPSDAGG GDLIRVVYEG AHQHGSPPPS SASHQQGGGD ANQYELGAQV FGGARSTSQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08278A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982253.1 | 7e-49 | probable WRKY transcription factor 33 | ||||
TrEMBL | K4AGJ4 | 2e-47 | K4AGJ4_SETIT; Uncharacterized protein | ||||
STRING | Si038001m | 3e-48 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26440.1 | 2e-18 | WRKY DNA-binding protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08278A |