PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08220A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HB-other | ||||||||
Protein Properties | Length: 200aa MW: 21383.8 Da PI: 5.072 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.8 | 3.2e-07 | 125 | 152 | 28 | 55 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRake 55 e++ LA+++gL+ +q+ +WF N+R ++ Oropetium_20150105_08220A 125 PEKAALAESTGLDAKQINNWFINQRKRH 152 68899********************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.3E-18 | 60 | 104 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.4E-19 | 62 | 102 | IPR005540 | KNOX1 |
CDD | cd00086 | 6.48E-8 | 110 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-13 | 124 | 156 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.28E-9 | 125 | 159 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-9 | 126 | 151 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 9.556 | 126 | 155 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEQPLPLLAS TSKSTTTPFS LELDQRATTA SSTAAEVPTP AAAAASDPSR QSNNNEGDSE 60 IIKVNIMSHP LYPALLRAFI DCRKVGAPPE VVGRLSALAG EVDMNSNDRQ EELAKDPELD 120 QFMEPEKAAL AESTGLDAKQ INNWFINQRK RHWKPAPPPA MLAPAADYRG ASSSSANRAA 180 LRAAEGHYFP GGSTYPREP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08220A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035205 | 3e-42 | BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds. | |||
GenBank | BT040622 | 3e-42 | BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds. | |||
GenBank | KJ727571 | 3e-42 | KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001336606.1 | 5e-46 | uncharacterized protein LOC100193050 isoform 2 | ||||
Swissprot | Q75LX7 | 2e-34 | KNOS4_ORYSJ; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A1D6KYU8 | 2e-44 | A0A1D6KYU8_MAIZE; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A317Y5T9 | 2e-46 | A0A317Y5T9_MAIZE; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | B4FU34 | 1e-44 | B4FU34_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G061101_P01 | 2e-45 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4746 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 2e-14 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08220A |