PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_08196A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 246aa MW: 27536 Da PI: 7.8344 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 181 | 213 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yps +e+ +LA ++gL+ +q+++WF N R + Oropetium_20150105_08196A 181 HPYPSDSEKLRLAVRTGLSRSQISNWFINARVR 213 89*****************************98 PP | |||||||
2 | BELL | 56.3 | 7.8e-19 | 30 | 92 | 9 | 71 |
BELL 9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 +akLl ll e++ r ++y +l v+ssFe + g g+a+ Ytsl ++a++rhF +L+ ai + Oropetium_20150105_08196A 30 QAKLLGLLSELESRQERYFVELGRVASSFEPALGPGAAAAYTSLMSQAMARHFGNLRRAILRR 92 69**********************************************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 4.8E-17 | 16 | 89 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.645 | 154 | 217 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.54E-10 | 157 | 218 | No hit | No description |
SMART | SM00389 | 1.8E-9 | 157 | 221 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-26 | 162 | 223 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-17 | 163 | 225 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.5E-18 | 174 | 213 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MPTTFLLLPE KAQRYAKLHR AAKNDADGVQ AKLLGLLSEL ESRQERYFVE LGRVASSFEP 60 ALGPGAAAAY TSLMSQAMAR HFGNLRRAIL RRLRLLAATT AAARRRRRLF AGADDEDEKE 120 EEEEDDDDDG GPVTDEMVDR VARRTKLAAA ARAEQAWRPL RGLPEGSVAV LRAWLFDHFL 180 HPYPSDSEKL RLAVRTGLSR SQISNWFINA RVRLWKPMIE EMYNQEFSEE FPLSNSNSTS 240 GASSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 2e-16 | 163 | 221 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 163 | 221 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_08196A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY082396 | 6e-81 | AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792968.1 | 4e-86 | BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A2T7C2N2 | 1e-85 | A0A2T7C2N2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00979.1.p | 3e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75430.1 | 2e-36 | BEL1-like homeodomain 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_08196A |