PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08193A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 643aa    MW: 71256.4 Da    PI: 6.3342
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08193AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.6e-094024391954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Oropetium_20150105_08193A 402 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 439
                                664459******************************88 PP
2BELL118.72.7e-38265336172
                       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                e+qelq+k akL+ +l+eVd++Yk+y++q+q v++sF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Oropetium_20150105_08193A 265 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQLVVASFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 336
                                689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.2E-52189334IPR006563POX domain
PfamPF075264.4E-50195332IPR006563POX domain
PROSITE profilePS5007112.309380443IPR001356Homeobox domain
CDDcd000861.72E-12383444No hitNo description
SMARTSM003891.6E-9383447IPR001356Homeobox domain
SuperFamilySSF466892.74E-17384449IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28386449IPR009057Homeodomain-like
PfamPF059201.0E-17400439IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MATYYSSPGS GRDSQTMYSA ESGNASYPMP SAALGSMLYP SNASSGAYTE FSGIIQNQQN  60
FMELPGHPSS VSHSHDSASK EATNMVPSLT EQRPFGPLKD MRNEMLMHLM HGAHSGGSNL  120
IHNDAQNTTQ LEFDMLNNHN STNVPSAPDR GLSLSLNTHI LAPSYPYWSV KPDILAPHSY  180
QGDENRIKNM QSEAIRNSKY LKAAQELLDE IVCVWKSVKQ KANKGNAEAG KADVKETEGG  240
TNSERVSSNP QESGANAVAE LSTAEKQELQ NKMAKLMAML DEVDRKYKHY YHQMQLVVAS  300
FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AINDQINIIR KKLGEEDNTS GKEGRLTRLR  360
YIDQQLRQQR AFQQYGMLQQ NAWRPQRGLP ESSVSILRAW LFEHFLHPYP KDSEKLMLAR  420
QTGLTRSQIS NWFINARVRL WKPMIEDMYK EEIGEAELDS NSSSDNVSRS KVKVPSSDEK  480
EDLKSSTSQA CQISQLGESK ANISMMSFSG APVSFHNEGN PDDSFMNLML KDQRQGETVG  540
SLLHDAVAHH SDDGARFMAY HLAELGRYGN SSVSLTLGLQ HTENNLSVPN TQPAFPGVGH  600
EDIYNATAPL SVAPTSSDFE STNQIEQQQR FESSPLMHDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16389446562Homeobox protein Meis2
3k2a_B3e-16389446562Homeobox protein Meis2
4xrs_A2e-16389446158Homeobox protein Meis1
4xrs_B2e-16389446158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08193A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792966.10.0BEL1-like homeodomain protein 7
RefseqXP_025792967.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0A8Y1Y70.0A0A0A8Y1Y7_ARUDO; Uncharacterized protein
STRINGSi034602m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-114BEL1-like homeodomain 6