PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08179A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 351aa    MW: 37659.4 Da    PI: 8.9231
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08179AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.5e-17249285135
                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Oropetium_20150105_08179A 249 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 285
                                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.2E-10108143IPR010399Tify domain
PROSITE profilePS5132015.095108143IPR010399Tify domain
PfamPF062005.2E-13111142IPR010399Tify domain
PfamPF062031.4E-14177217IPR010402CCT domain
PROSITE profilePS5101713.364177219IPR010402CCT domain
SMARTSM004012.5E-9243297IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.42E-10247291No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13248288IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.89E-15248287No hitNo description
PROSITE patternPS003440249276IPR000679Zinc finger, GATA-type
PfamPF003202.5E-14249285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
IPSHHHTFYE FGPQLHHYSS RPASPPSIPQ SRVGRSPPPP AMSDAAAARD ADVEMRDAAS  60
AAAAPPXXXX XXXXXXXXXX XXXXXXXXNP PAPVPAQEMP EPEPVSALPA DPNQLTLLFQ  120
GEVYVFDSVT PDKVQAVLLL LGSRELPPGL AGMVLPNQNE SKGYDDILRR TDIPAKRVAS  180
LIRFREKRKE RNFDKKIRYA VRKEVALRMQ RRKGQFAGRA SLEGESSAIG CDPASHGSGL  240
DFPCRESKCQ NCGTSEKMTP AMRRGPAGPR TLCNACGLMW ANKGTLRNCL KAKIESPMVA  300
VEQSHLAATQ SGSDNKALVI PKNDCVSGSS GNVGDSVPAG AAAMEAPKAL *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08179A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9637541e-173EU963754.1 Zea mays clone 272371 GATA transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464073.11e-138GATA transcription factor 18
SwissprotA2XKR71e-137GAT18_ORYSI; GATA transcription factor 18
SwissprotQ10F251e-137GAT18_ORYSJ; GATA transcription factor 18
TrEMBLC5WPL51e-136C5WPL5_SORBI; Uncharacterized protein
STRINGSb01g011840.11e-137(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-66ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]