PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08060A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 373aa MW: 40285 Da PI: 7.8178 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 162.7 | 1.9e-50 | 118 | 281 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec.eaesssssas 83 a +kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LG+dk+skt++WLl+ +k+ai+e++ t + +++sec e++sss s++ Oropetium_20150105_08060A 118 ASRKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGYDKASKTVQWLLNTSKAAIQEIMTTtDYDASSECvEDGSSSLSVD 201 789**********************************************************99967777899999999999999 PP TCP 84 nsssg...........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 + ++ ka++s++++k+++ksa+++ l+ke+rakar+rarert+ek+r+++++ Oropetium_20150105_08060A 202 GKAHNpaeelqqagdpqqekgghgcsegkkpaKARRSTTTPKPPRKSANAHPVLDKETRAKARERARERTKEKHRMRWVK 281 6665567778888888889999*********88888888**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-45 | 119 | 277 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.876 | 120 | 178 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.593 | 257 | 274 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MFPFCDSSPS PMDMPLYQQL LLSPPSPKPD QSISSFYYYP CSPFAAAAEA SSSFHLSYQQ 60 LSSSAVAAAT PPPTVIKTPE LSTMHHPSME RPPPPTLDAG NGQQGAGGGV ISLDAASASR 120 KDRHSKICTA GGMRDRRMRL SLDVARKFFA LQDMLGYDKA SKTVQWLLNT SKAAIQEIMT 180 TTDYDASSEC VEDGSSSLSV DGKAHNPAEE LQQAGDPQQE KGGHGCSEGK KPAKARRSTT 240 TPKPPRKSAN AHPVLDKETR AKARERARER TKEKHRMRWV KLASAIDVEA AGSDRPSSNN 300 LSHSPSMNMA TELEERCSST LNTGGRTQEV SMATEPSDMI LPFGNGGYGG SNYCQQEQWE 360 LGGVVFANSR FY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08060A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982035.1 | 1e-152 | transcription factor TEOSINTE BRANCHED 1 | ||||
Swissprot | Q93WI2 | 1e-131 | TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1 | ||||
TrEMBL | A0A346M107 | 0.0 | A0A346M107_CYNDA; Teosinte branched 1 | ||||
STRING | Pavir.Ia00838.1.p | 1e-156 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 7e-24 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08060A |
Publications ? help Back to Top | |||
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