PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07876A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 265aa    MW: 28977.6 Da    PI: 8.5894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07876AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31190248259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++++tYe++Hnh 
  Oropetium_20150105_07876A 190 ADNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLIVTYENDHNHA 248
                                69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.9E-6169187IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.8E-34177250IPR003657WRKY domain
PROSITE profilePS5081131.043184250IPR003657WRKY domain
SuperFamilySSF1182903.79E-27185250IPR003657WRKY domain
SMARTSM007747.9E-37189249IPR003657WRKY domain
PfamPF031061.1E-26191247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEAAEKANRA AVESCKKLVA VLSRSGDPFK PMPVAAETDE AVAQNMFLET PLLDLNSSSF  60
PSPNAPVAVQ QKNNSSSNKV LSVPPMANPV TTTTHIQFQP QQQHPQSQMQ KSFLFEQTPS  120
SAVEQFHIEV PRGGAKEVIS FSFDNNSVCT SSAATSFFTS ISSQLISMKP RDKRVVRVPA  180
ISDKNADIPA DNYSWRKYGQ KPIKGSPHPR GYYRCSSKKD CPARKHVERC RSDPAMLIVT  240
YENDHNHAQP LDPSVLTGNA EACT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-201872501274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07876A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8352026e-78CT835202.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678752.11e-100protein WRKY1
TrEMBLK4AMM77e-99K4AMM7_SETIT; Uncharacterized protein
STRINGSi040171m1e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-41WRKY DNA-binding protein 7