PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07866A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 381aa MW: 39560.7 Da PI: 4.6497

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07866A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.9	1.1e-13	221	271	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++ Oropetium_20150105_07866A 221 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQK 271 679**************************************9888766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-15	217	281	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	219	273	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-10	220	273	No hit	No description
Pfam	PF00170	1.0E-10	221	270	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-9	221	270	No hit	No description
Pfam	PF12498	1.3E-26	292	373	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MERVFSVEEI PNPYWAPPQP QAPAAGAAAA PVGGGGGGAG GGGGGAGAMN RCPSEWYLEK 60 FLEEEVFDSP GSGTSAGRGL GGVDVVETKP PVGAPVMAST SVVDPVEYNA MLKQKLEKDL 120 AAVAMWRATS TMPPERSGAA STLPNMEVSH AGPLNLIGGN EIPVQSKPAG GPNAGLGPQA 180 IQNPDVLVKQ ATSSSSREQS DDDDMEGEAE TTGNANPVQQ RLQRRKQSNR ESARRSRSRK 240 AAHLNELEAQ VAQLRVENSS LLRRLADVNQ KFNDAAVDNR VLKADVETLR AKGSPSDSTS 300 DAAVPIQDDP NSYFATPSEV GANNTYMPDI ASSTQEDEDF INGALAPGKM GTAASLQRVA 360 SLEHLQKRMC GGPASSGSTS *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MERVFSVEEI PNPYWAPPQP QAPAAGAAAA PVGGGGGGAG GGGGGAGAMN RCPSEWYLEK  60
FLEEEVFDSP GSGTSAGRGL GGVDVVETKP PVGAPVMAST SVVDPVEYNA MLKQKLEKDL  120
AAVAMWRATS TMPPERSGAA STLPNMEVSH AGPLNLIGGN EIPVQSKPAG GPNAGLGPQA  180
IQNPDVLVKQ ATSSSSREQS DDDDMEGEAE TTGNANPVQQ RLQRRKQSNR ESARRSRSRK  240
AAHLNELEAQ VAQLRVENSS LLRRLADVNQ KFNDAAVDNR VLKADVETLR AKGSPSDSTS  300
DAAVPIQDDP NSYFATPSEV GANNTYMPDI ASSTQEDEDF INGALAPGKM GTAASLQRVA  360
SLEHLQKRMC GGPASSGSTS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07866A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463740.1	1e-176	light-inducible protein CPRF2
Swissprot	Q7X9A8	1e-156	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A1D8RJ53	0.0	A0A1D8RJ53_ELECO; Opaque 2 protein
STRING	Sb01g005170.1	1e-176	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	8e-33	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07866A

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]