PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07788A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 343aa MW: 36081 Da PI: 9.6708 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.9 | 1.5e-33 | 37 | 160 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 +g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a ai +l+ + Oropetium_20150105_07788A 37 TGGKDRHSKVYTAKGVRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAIEWLINAAAGAIEKLPALdpaafatavaesakvvkqsk 120 689*************************************************************55444443333333333222 PP TCP 66 ...ssssaseceaesssssasnsssg..................................k 89 s + + Oropetium_20150105_07788A 121 sggS---------------------StsetetskgselslsrsdsrsradrevtvastsaQ 160 2221.....................011122211222222222222222222222222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-35 | 38 | 184 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.452 | 39 | 97 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MRGSQQAETA AAAWGQPPAL LPPPQGTASR ICRVRGTGGK DRHSKVYTAK GVRDRRVRLS 60 VPTAIQFYDL QDRLGYDQPS KAIEWLINAA AGAIEKLPAL DPAAFATAVA ESAKVVKQSK 120 SGGSSTSETE TSKGSELSLS RSDSRSRADR EVTVASTSAQ AASFTELLTG MAEHRQAWQQ 180 QQQQKPTSAA EHTEKAGANG LSTTHDFSGA HTGGIKFGDA PPFGMVPAQP FSFPASVEMP 240 HFSLAQDALA AAPVPAGDYN LNFSMSSGFL GAANRGTLQS NSSQSNFSGH HQQLQRLDGP 300 FLFGHSAAAA THPSSENQLT ATAALQLWDG LRHSGVKEKS KN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-25 | 44 | 98 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-25 | 44 | 98 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07788A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644443.1 | 1e-141 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-106 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A3L6TG38 | 1e-143 | A0A3L6TG38_PANMI; Uncharacterized protein | ||||
STRING | GRMZM2G089361_P01 | 1e-140 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-33 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07788A |