PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_07707A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35555 Da PI: 8.5442 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl Oropetium_20150105_07707A 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++ Oropetium_20150105_07707A 69 GGFSEEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.706 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.0E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.22E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.332 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.91E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK 120 QSRKDQRQQQ QFMRXXXXXX XXXXXXXXXX XXXXXXXXXX YSWHQQTMAV PVQQPTMSGT 180 MMEGHRGGDE VDESIRKLLY KLGGSPFAAL PQCVAPPMYE GSPSFMPTSC QVETTSLHEG 240 GLQCSSGLPN LELDQNFHFN QVKLDGLDCF FGMGDQSMRW CEVNPLACSN NTVASTSQGM 300 QQYGLVDEQV NLGIK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_07707A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981607.1 | 1e-167 | transcription factor MYB4 | ||||
TrEMBL | K4ACS4 | 1e-166 | K4ACS4_SETIT; Uncharacterized protein | ||||
STRING | Si036681m | 1e-167 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-80 | myb domain protein 36 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_07707A |