PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07703A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 242aa MW: 26370.1 Da PI: 11.6923 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.6 | 8.3e-11 | 118 | 161 | 11 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +NR++A+rsR+RK++++eeL++ ++ L ae + L+ +l+ l Oropetium_20150105_07703A 118 XSNRLSAQRSRARKQQRLEELRTTAARLRAEKDGLAARLQALAR 161 59*************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 8.864 | 110 | 173 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.7E-4 | 111 | 172 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.06E-7 | 117 | 161 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-7 | 119 | 161 | No hit | No description |
Pfam | PF07716 | 1.6E-4 | 119 | 160 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.98E-10 | 119 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSPPCKMMMM AARAAAVASS PRAANGHEAL GLDLLALPSS SLSCGGARGD QQGDVITSGL 60 FTPWGPESCP SLDQVMXXXX XXXXXXXXXX XXXXXXYGRD AGADEXXXXX XXXXXXXXSN 120 RLSAQRSRAR KQQRLEELRT TAARLRAEKD GLAARLQALA RHGLAVRCQN ARLRAEAHAL 180 SRRVREARRI LALQQRLARF VPSPMLMPMP MRMPQEQHHH HQPAGGATPA VGLASSSLMM 240 T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07703A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957676 | 1e-63 | EU957676.1 Zea mays clone 1603335 ocs element-binding factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466386.1 | 8e-42 | DNA-binding protein EMBP-1 | ||||
TrEMBL | C5WZ82 | 2e-40 | C5WZ82_SORBI; Uncharacterized protein | ||||
STRING | Sb01g006850.1 | 3e-41 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13845 | 24 | 29 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07703A |