PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07680A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | G2-like | ||||||||
Protein Properties | Length: 238aa MW: 24905 Da PI: 6.5833 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 30.7 | 6.8e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vk+Ltl+hvkSHLQ+YR+ Oropetium_20150105_07680A 1 MNVKDLTLAHVKSHLQMYRT 20 9******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MNVKDLTLAH VKSHLQMYRT VKSTDRSPHI TTGEALLEPQ QRTATGMMKL VAVEAAAAAE 60 GRGSLVPAVV LPTCDNMVGS PAAAAATTSA AHFICAPLQA SPPPPPMHQR RTTDLTAAAL 120 EKGVAIVDPS LHRSQKHNYS SPGEVQQDPS RQQAAAAHQE EVNGHTAAVV GLHASVEAAV 180 AATNISSPAS SSSPSLASLD LLTTDDMYAP NLEISLGRQD WNNMAAHAEE LSLLKYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07680A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020393441.1 | 4e-41 | probable transcription factor GLK2 | ||||
TrEMBL | A0A3L6SBG0 | 3e-40 | A0A3L6SBG0_PANMI; Putative transcription factor RL9 | ||||
STRING | ORUFI03G36810.1 | 4e-40 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6554 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 4e-10 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07680A |