PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07666A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 401aa MW: 42958.8 Da PI: 7.7885

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07666A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.3e-31	274	329	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Oropetium_20150105_07666A 274 KTRRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 329 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.255	271	331	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-28	272	332	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	272	332	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-25	274	329	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	276	327	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MPGRAHLLNP DPSPVTPNRP TAFSFFPCSR VLAFRPLIPR EDSWWCVSLF ACMGLDVGEI 60 GMGLDLGLDL SLFAARSAGR MAAAAAAKGG PAAVDACIRS LEEERQKIEV FRRELPLCVR 120 LLADVIEELK EEAVKRGGDV VAKADDSDKR KWMSTAQLWV DSEAKSEESD KEQQSEITSP 180 EPKLLRGAPL PLKAVAAVPP PPPSYFRTQD KVVGLPGLPV LSPIAKRPLS PVPDGDEQRR 240 QSMLAARFAA TMPPSAPALS LHSQTQQQQQ AARKTRRCWS PELHRQFVAA LHQLGGPQVA 300 TPKQIREVMQ VDGLTNDEVK SHLQKYRLHN RRSPGGATSQ QVVLVGGLWV PKEQSSSQSG 360 SPQGPLQFSG SGSGIAASAA TVGGGDSGSS SSDEDDKSDC *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MPGRAHLLNP DPSPVTPNRP TAFSFFPCSR VLAFRPLIPR EDSWWCVSLF ACMGLDVGEI  60
GMGLDLGLDL SLFAARSAGR MAAAAAAKGG PAAVDACIRS LEEERQKIEV FRRELPLCVR  120
LLADVIEELK EEAVKRGGDV VAKADDSDKR KWMSTAQLWV DSEAKSEESD KEQQSEITSP  180
EPKLLRGAPL PLKAVAAVPP PPPSYFRTQD KVVGLPGLPV LSPIAKRPLS PVPDGDEQRR  240
QSMLAARFAA TMPPSAPALS LHSQTQQQQQ AARKTRRCWS PELHRQFVAA LHQLGGPQVA  300
TPKQIREVMQ VDGLTNDEVK SHLQKYRLHN RRSPGGATSQ QVVLVGGLWV PKEQSSSQSG  360
SPQGPLQFSG SGSGIAASAA TVGGGDSGSS SSDEDDKSDC *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07666A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981657.1	1e-130	transcription factor HHO5
TrEMBL	A0A059Q2Z5	1e-137	A0A059Q2Z5_9POAL; DNA binding protein
STRING	Si036412m	1e-129	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	8e-41	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07666A