PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07596A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 421aa    MW: 48546.5 Da    PI: 9.8543
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07596AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-281059251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs+ g+ly +ss
  Oropetium_20150105_07596A 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALILFSHAGRLYQFSS 59
                               9***********************************************96 PP
2SRF-TF95.62.2e-30173223151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                krienk+nrqvtfskRr g+lKKA E+SvLCdaeva+iifs++gklyeys+
  Oropetium_20150105_07596A 173 KRIENKINRQVTFSKRRSGLLKKATEISVLCDAEVALIIFSTKGKLYEYST 223
                                79***********************************************96 PP
3K-box921.1e-3083173999
                      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                 ++ +++s +qe+ +Lk e+e Lq++qR+llG+dL +L+  eL qLe+q++k lk+iRs+K+++ll+++ +l++ke++lq++n+
  Oropetium_20150105_07596A  83 PSSDEMQSNYQEYVQLKTEVEVLQNSQRNLLGDDLAKLNASELDQLETQVDKTLKRIRSRKTQVLLDELCDLKRKEQMLQDANR 166
                                567889****************************************************************************** PP

                      K-box  93 aLrkkle 99 
                                +L++kl+
  Oropetium_20150105_07596A 167 TLKRKLK 173
                                *****87 PP
4K-box101.11.6e-33254348599
                      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                                   s e++ + ++++e++kLk+++e++q+ q+hl+Ge+Le+L+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+ e++lq
  Oropetium_20150105_07596A 254 VLISSESESQGNWCHEYRKLKAKVETIQKCQKHLMGEELETLNLKELQQLEQQLESSLKHIRSRKSQLMLESISELQRNERSLQ 337
                                55566788899************************************************************************* PP

                      K-box  89 eenkaLrkkle 99 
                                eenk L+k+l+
  Oropetium_20150105_07596A 338 EENKVLQKELA 348
                                *******9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.188161IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-37160IPR002100Transcription factor, MADS-box
CDDcd002653.65E-36279No hitNo description
SuperFamilySSF554559.94E-30278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2685172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.05788178IPR002487Transcription factor, K-box
PROSITE profilePS5006628.16169225IPR002100Transcription factor, MADS-box
CDDcd002655.62E-35169251No hitNo description
SuperFamilySSF554558.76E-28169264IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-32169224IPR002100Transcription factor, MADS-box
PfamPF003199.6E-25174221IPR002100Transcription factor, MADS-box
PfamPF014867.1E-29258347IPR002487Transcription factor, K-box
PROSITE profilePS5129717.085263353IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALILFSH AGRLYQFSSS  60
SNLFKTLERY QRYIYAAADA AVPSSDEMQS NYQEYVQLKT EVEVLQNSQR NLLGDDLAKL  120
NASELDQLET QVDKTLKRIR SRKTQVLLDE LCDLKRKEQM LQDANRTLKR KLKRIENKIN  180
RQVTFSKRRS GLLKKATEIS VLCDAEVALI IFSTKGKLYE YSTDQWYVAL RTSLSPHMDK  240
ILERYERYSY AEKVLISSES ESQGNWCHEY RKLKAKVETI QKCQKHLMGE ELETLNLKEL  300
QQLEQQLESS LKHIRSRKSQ LMLESISELQ RNERSLQEEN KVLQKELAGK QKTQKQQVHW  360
DHGQQPQISS SSSSFMMREA PTTVNISNYP AAAGVRVEGT AEQPQVRIGL PPWMLSHLSG  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-20753481102Developmental protein SEPALLATA 3
4ox0_B1e-20753481102Developmental protein SEPALLATA 3
4ox0_C1e-20753481102Developmental protein SEPALLATA 3
4ox0_D1e-20753481102Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07596A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7929680.0DQ792968.1 Eleusine indica fruitful-like MADS-box transcription factor (FUL1a) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547619.11e-124floral homeotic protein APETALA 1
SwissprotQ10CQ11e-120MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLA0A0A9QQM81e-134A0A0A9QQM8_ARUDO; Uncharacterized protein
STRINGOMERI03G30850.11e-118(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]