PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07368A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 25083.2 Da PI: 6.245 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8e-15 | 55 | 97 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +v + +qlG++ W++Ia+ + gRt++++k++w++ Oropetium_20150105_07368A 55 GGFTEEEDAVIVSLYTQLGSK-WSLIASQLE-GRTDNDIKNYWNT 97 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-11 | 34 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.85E-22 | 34 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.077 | 35 | 48 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 22.239 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-11 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-12 | 55 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.56E-10 | 57 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 61 | 100 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MFNLSRCPAV AVDLDGCTRH VFFVVCSPRG AGLKRCGKSC RLRWLNYLRP DIRHGGFTEE 60 EDAVIVSLYT QLGSKWSLIA SQLEGRTDND IKNYWNTKLK KRLAAAAAVY APSPQPLARQ 120 PAQLAPAAAH SPASSLFPSL AIPTVKTETY TCDDFLAPAE FRDPLVASGG GCADAAGGGS 180 TPASAASSAS NWSTDNGVSE GFLLDFCAGS SSDLGTAAGQ LELPGGYYYP LDPSLSLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-18 | 35 | 103 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-18 | 35 | 103 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-18 | 35 | 103 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07368A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376409 | 2e-83 | AK376409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123B18. | |||
GenBank | JF951908 | 2e-83 | JF951908.1 Triticum aestivum clone TaMYB25 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968503.1 | 8e-87 | transcription factor RAX2 | ||||
TrEMBL | A0A3L6SQD0 | 9e-88 | A0A3L6SQD0_PANMI; Transcription factor RAX2-like | ||||
STRING | Si002629m | 3e-86 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-40 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07368A |