PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07363A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 433aa    MW: 49034.2 Da    PI: 9.8552
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07363AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.42.4e-35431851128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                lp+G++F+P+d+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk
  Oropetium_20150105_07363A  43 LPAGVKFDPSDQELI-EHLEAKVKEEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRK 122
                                799************.99******999677544333..3444433445**********.555666799**************** PP

                        NAM  75 nra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                +r+          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Oropetium_20150105_07363A 123 RRKiqtecdvhKGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 185
                                **75666664433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3933204IPR003441NAC domain
PROSITE profilePS5100534.01843204IPR003441NAC domain
PfamPF023658.5E-1644185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNRGHISSSK LINEKLEEHQ ISTAKQCPNC HHRIDTKPDW VGLPAGVKFD PSDQELIEHL  60
EAKVKEEGSR SHPLIDEFIP TIDGEDGICY THPEKLPGVT RDGLSKHFFH RPSKAYTTGT  120
RKRRKIQTEC DVHKGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKH RKPEKTNWVM  180
HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSSDRGGAA TAAVQEQRRR DSGSGSCSSR  240
DHEVSATSFT AGYTVSTAAV EMQQQQHLKQ PLDHFSFVPF RKSFDQEVVV GGGDQVPSDQ  300
FGRSDQRHHV ATQEQQQPHT PVLATTAAVP ATAFLISRPS NPVSTIVPPT MQHASVVLDH  360
DQFHVPAILL HHHDKFQNMQ QQQQHPPQHQ QPQQKLDRRK IQFRTPRRQN GLTRTGHLTT  420
KIIMGSRNKA GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-124118513140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07363A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170050.0KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152301.20.0ANAC075
RefseqNP_001183479.10.0ANAC075
TrEMBLA0A1E5VUT40.0A0A1E5VUT4_9POAL; NAC domain-containing protein 73
STRINGGRMZM2G166721_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-117NAC domain containing protein 75