PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07343A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 524aa    MW: 55393.6 Da    PI: 7.8062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07343AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.8e-30261320159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d++++++tYeg+Hnh+
  Oropetium_20150105_07343A 261 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDKSILITTYEGSHNHQ 320
                                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31246322IPR003657WRKY domain
SuperFamilySSF1182903.53E-27254322IPR003657WRKY domain
PROSITE profilePS5081127.91256322IPR003657WRKY domain
SMARTSM007748.8E-36261321IPR003657WRKY domain
PfamPF031062.4E-26262320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MEVAIEKPPP VKEETNRADA KPEMQIGRAL PIVFESFQSA QRTASIKQQD EDSSSSSLEA  60
AKXXXXXXXX XXERLKTMLS RIVSEYQSLQ MHFRDVVKLR EEQQATAAKA TTTKVIHPVE  120
EPAQPAAAEA DADDLVCSLT LGGARTSNGG VHRKGHDRTS SSSGTTAGDD DSTLSLGLRF  180
SSRGPAPATD DETTKASRAG PVLNLSSDGS SSANDDDDTA KPAGESLNRK SPSGERADDE  240
VQQQAKKTRV SVRVKCDTPT MNDGCQWRKY GQKISKGNPC PRAYYRCTVA PNCPVRKQVQ  300
RCADDKSILI TTYEGSHNHQ LPPAATAMAS TTSAAAAMLT XXXXXXXXXX XXHGHLPLAS  360
AGLLGGPTTM VSSTGASCPT ITLDLTAPAG PHSLMXXXXX XXXXXXGYES KALPAAWSSG  420
YPAYGHQPPS YYAAKSSPAM MGHHLFGGQL GVPSSRPDQL FGGQSSSYLQ RSSSLGAAAA  480
PKTTIATDTL AKAITSDPSF QTVLAAVITS YMGRGGGGEA TQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212613221777Probable WRKY transcription factor 4
2lex_A2e-212613221777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245254KKTRVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07343A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457211.10.0probable WRKY transcription factor 72
TrEMBLC5XM161e-179C5XM16_SORBI; Uncharacterized protein
STRINGSb03g003370.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-44WRKY DNA-binding protein 72