PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07280A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | BES1 | ||||||||
Protein Properties | Length: 94aa MW: 10345.6 Da PI: 11.9768 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 80 | 7.1e-25 | 47 | 94 | 2 | 49 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnne 49 +s r+pt +ErEnn++RERrRR++aa+iyaGLRa ++y lpk+aD+n+ Oropetium_20150105_07280A 47 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRASAGYVLPKHADQND 94 789********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 7.8E-18 | 49 | 94 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MEVIAVGAGR KDDEGGEVAA AGPRGCIRST QGPWTVRRRG RGGGVTTSLR HPTPRERENN 60 RQRERRRRQV AARIYAGLRA SAGYVLPKHA DQND |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07280A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-61 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971713.1 | 1e-27 | protein BZR1 homolog 3-like | ||||
TrEMBL | J3KWX2 | 6e-33 | J3KWX2_ORYBR; Uncharacterized protein | ||||
STRING | OB01G14780.1 | 1e-33 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07280A |