PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_07192A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27800.4 Da PI: 4.7603 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.4 | 7.2e-08 | 98 | 124 | 29 | 55 |
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55 kr +lg+f ta eAa a+++a+++++g Oropetium_20150105_07192A 98 KRLWLGSFPTALEAAHAYDEAARAMYG 124 9***********************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.932 | 16 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-6 | 93 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-9 | 96 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-15 | 97 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-13 | 98 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MERVEGGDSS SGGQVRKKRM RRKSTGPDSI AETIKRWKEH NQKHQEESGT RKAPAXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXKRL WLGSFPTALE AAHAYDEAAR 120 AMYGPTARVN FSESSAEANS GFTSALSLLA SNVPPAAQRS DDKDEVESVE TEVHEVKTEM 180 NDDLPSIHVE CKTLEVFQSE ENVLRKDGGV SYDYFHVEDV LEMIIIELNA AKEIEVHGDD 240 GFSLFSY* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_07192A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ848096 | 0.0 | GQ848096.1 Zoysia japonica cultivar Meyer DREB-like protein 1 (DREB1) mRNA, complete cds. | |||
GenBank | GQ868711 | 0.0 | GQ868711.1 Zoysia japonica cultivar Palisades DREB-like protein 1 (DREB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968294.1 | 3e-98 | dehydration-responsive element-binding protein 2A isoform X1 | ||||
Swissprot | A2WL19 | 1e-74 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A4ZZA1 | 1e-117 | A4ZZA1_9POAL; Dehydration responsive element binding protein | ||||
STRING | Si002067m | 1e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_07192A |