PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07174A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-X1
Protein Properties Length: 638aa    MW: 69349.9 Da    PI: 8.2296
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07174AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.93.4e-06259276118
                   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                CG H+C   CH GpCppC
  Oropetium_20150105_07174A 259 CGLHRCPVDCHDGPCPPC 276
                                ****************** PP
2zf-NF-X117.68.1e-06366385119
                   zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                                CG+H+C + CH+G C++ C+
  Oropetium_20150105_07174A 366 CGRHRCPERCHRGRCDEtCR 385
                                *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.34E-5105163No hitNo description
PROSITE patternPS013590106156IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.022106157IPR001841Zinc finger, RING-type
SMARTSM004380.008206224IPR000967Zinc finger, NF-X1-type
PfamPF014220.0071207223IPR000967Zinc finger, NF-X1-type
CDDcd060083.24E-9249297No hitNo description
PfamPF014221.0E-4259277IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011259278IPR000967Zinc finger, NF-X1-type
CDDcd060083.90E-7302342No hitNo description
PfamPF014221.5306330IPR000967Zinc finger, NF-X1-type
SMARTSM004380.047312331IPR000967Zinc finger, NF-X1-type
CDDcd060086.15E-9356405No hitNo description
PfamPF014220.0027366385IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023366386IPR000967Zinc finger, NF-X1-type
PfamPF014220.0076419437IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016419438IPR000967Zinc finger, NF-X1-type
SMARTSM0043825468483IPR000967Zinc finger, NF-X1-type
PfamPF0142224472482IPR000967Zinc finger, NF-X1-type
PfamPF0142217491500IPR000967Zinc finger, NF-X1-type
SMARTSM00438270491536IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
SSYAAAASAA GSSSGKTNRI STSPVVGTAR PQVPAPAPPV AKPSVVSDSD PSSYSSSSGD  60
EADITGCDPA AASVVSTYLS VAGEGADLSK VGIFLSSAAR RRSPPCLICF DPIRPSDPVW  120
SCSSSCFAIL HLPCIQSWAH QSATAAPSPT WGCPKCRFPY PKSQTPTSYL CFCSKTLDPA  180
PDPWILPHSC GDVCGRRLNA NPDSGCEHTC LLLCHPGPCP PCPAVVPNSP CFCGAHWQPR  240
RCAHQRYSCG GECNKRLSCG LHRCPVDCHD GPCPPCTVRG NYKCECGETM EEKLCSERVF  300
QCKRECGEML DCRKHRCERG CHGGKCGECP LRGRRTCPCG KKDYPRLECD AEAATCGSTC  360
EKMLGCGRHR CPERCHRGRC DETCRLVITK SCRCGGLKKE VPCYQELTCE RKCQRSRDCG  420
RHVCKRRCCA GDCAPCSEVP CGTEKNQKPP KCSKKCNIAR LCRHKLECRP HKCHYGACPP  480
CKLTCGEELS CGHKCKERCH GPVPPPNPDF TLKSTKRKME KHIECTPGTP CPPCQEVVLV  540
PCLGQHLGQE RAGSHTHGNM LWLVCRLDQT AYNSFGFSAD ALFQLEAVSL SEYMWKPSPL  600
RQSLLYKVMS CVRDPTESAR RRLGSLLVHI LALCHAI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07174A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK81e-175NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB8ADD80.0B8ADD8_ORYSI; Uncharacterized protein
STRINGOGLUM01G04180.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-161sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors