PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07094A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 32863.9 Da PI: 9.5387 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4e-10 | 31 | 76 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 WT++E +l+ +a + +W+++a+ ++ gRt +++ s+++++ Oropetium_20150105_07094A 31 VWTPQENKLFEQALAAVDLAhpDWHKVAQAIP-GRTVNEVMSHYRSL 76 6*************98776566**********.***********986 PP | |||||||
2 | Myb_DNA-binding | 44.8 | 3e-14 | 145 | 189 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Oropetium_20150105_07094A 145 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVHTRTPTQVASHAQKY 189 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.249 | 27 | 81 | IPR017884 | SANT domain |
SMART | SM00717 | 4.2E-7 | 28 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.16E-10 | 30 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 31 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-8 | 31 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.73E-8 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 19.158 | 138 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.06E-18 | 139 | 194 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-17 | 141 | 192 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-12 | 142 | 188 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 142 | 192 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-11 | 145 | 190 | No hit | No description |
Pfam | PF00249 | 3.9E-12 | 145 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MMREAYMEVL QPMDHYASRN NCNWFLGAPR VWTPQENKLF EQALAAVDLA HPDWHKVAQA 60 IPGRTVNEVM SHYRSLVVDV HQIESGVVPL PVYGGGGGAN SFTLQWDGNG GHGVGDFRHG 120 YRFAGGCGKR HPGRTLEQER KKGVPWTEEE HRQFLLGLKK YGKGDWRNIS RNFVHTRTPT 180 QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLNDDQPPS PSRSSLITNQ PNASAPTPVV 240 SQFSLTADTK QHGAANMPFN SPSRAPGIPA YAMGLQDQGL QCGPIHDQLI ANTSILL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-15 | 27 | 98 | 6 | 78 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07094A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455217.2 | 1e-170 | transcription factor DIVARICATA | ||||
Refseq | XP_021312949.1 | 1e-170 | transcription factor DIVARICATA | ||||
TrEMBL | A5HJS5 | 1e-180 | A5HJS5_9POAL; MYB_Al protein | ||||
STRING | Si002426m | 1e-166 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-78 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07094A |