PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07082A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 378aa    MW: 41233.4 Da    PI: 10.1572
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07082AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.81.4e-30192296190
                                EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                                f+k+ tpsdv+k++rlv+pk++ae+h              +  + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+
  Oropetium_20150105_07082A 192 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrapvpaetapEATTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVR 275
                                89***************************999999988886677799************************************* PP

                                HHT--TT-EEEEEE-SS.SEE CS
                         B3  71 angLkegDfvvFkldgr.sef 90 
                                ++gL++gD++vF+++    e+
  Oropetium_20150105_07082A 276 EKGLRAGDTIVFSHSTYgPEK 296
                                *************87554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-38188308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-29189304IPR015300DNA-binding pseudobarrel domain
CDDcd100173.12E-29190290No hitNo description
PfamPF023622.0E-27192291IPR003340B3 DNA binding domain
PROSITE profilePS5086313.465192306IPR003340B3 DNA binding domain
SMARTSM010195.6E-22192305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGVKSMSPTA VDSSSTSSSR FSGASTATTE SGAAQPLPVA VAAAPGTAEA GDVVSPAADE  60
GAVTSXXXXX XXXXXSSRYK GVVPQPNGRW GAQIYERHXX XXXXXXXXXX XXXXXXXXXX  120
XRYRGREAAT NFPGEGASAP ELSFLAAHSK SEIVDMLRKH TYADELRQGL RRGRGMGARA  180
QPTPAWARAP LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL KRAPVPAETA PEATTGKGVL  240
LNFEDGEGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTIVFSHS TYGPEKQLFI  300
DCKKTRTTEE SPVEKPREEA AHVVVRLFGV DIAGRNGCQK RGRPIEMVLE QGQEFLKKQC  360
LPPPHHHSPA LVGALLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4819130313115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07082A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116060.0AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968155.11e-163AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-130Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLK3XJ361e-162K3XJ36_SETIT; Uncharacterized protein
STRINGPavir.Ea00549.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-83related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]