PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07081A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 318aa    MW: 35033.5 Da    PI: 10.0965
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07081AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.72.4e-28154254184
                                EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHH CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltled.esgrsWevkliyrkksgryvltkGWke 67 
                                f+k+ tpsdv+k++rlv+pk++ae+h                g+ k +++ l +ed  +g++W+++++++++s++yvltkGW++
  Oropetium_20150105_07081A 154 FQKTVTPSDVGKLNRLVVPKHHAEKHfpmmkhapetaatttgGSGKGKGVLLNFEDdGDGKVWRFRYSFWNSSQSYVLTKGWSR 237
                                99****************************9999999999986677899******98999************************ PP

                                HHHHHT--TT-EEEEEE CS
                         B3  68 FvkangLkegDfvvFkl 84 
                                Fv+++g+++gD+v+F+ 
  Oropetium_20150105_07081A 238 FVREKGIQAGDTVTFSQ 254
                                ***************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-36150274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-29151258IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-27152252No hitNo description
PROSITE profilePS5086313.07154271IPR003340B3 DNA binding domain
SMARTSM010196.0E-23154273IPR003340B3 DNA binding domain
PfamPF023622.0E-25154253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTTESSSSTM LAYDDEAMVG SSSSHGSGAG GAAAAPAARQ PSRFKGVVPQ PNGRWGAQIY  60
ERHXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XFLAAHSKSE  120
IVDMLRKHTY ADELRQGLMR TRQPTPAWAR APLFQKTVTP SDVGKLNRLV VPKHHAEKHF  180
PMMKHAPETA ATTTGGSGKG KGVLLNFEDD GDGKVWRFRY SFWNSSQSYV LTKGWSRFVR  240
EKGIQAGDTV TFSQSAYGGP AEKQLLIGHR KMNKQRPPQE DEAAGADDAL AVDDTRVVKL  300
FGADIAVQRG KIEEAIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4315327013115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07081A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818627.13e-92AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS74e-86Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2S3HXU68e-91A0A2S3HXU6_9POAL; Uncharacterized protein
STRINGPavir.Ea00485.1.p2e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-62related to ABI3/VP1 2