PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07025A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 331aa    MW: 35655.2 Da    PI: 4.6398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07025AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.2e-14114156349
                        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 
                                y+GVr +k +g+W+AeIr  +     + kr +lg+f+ta  A  a+  a
  Oropetium_20150105_07025A 114 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDTAAAASTAYLTA 156
                                9*****99.**********55.....45**********99999999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-13113177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18113164IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-15113162IPR016177DNA-binding domain
PfamPF008473.7E-8113153IPR001471AP2/ERF domain
PROSITE profilePS5103217.266113171IPR001471AP2/ERF domain
CDDcd000181.57E-18114153No hitNo description
PRINTSPR003675.0E-8114125IPR001471AP2/ERF domain
PRINTSPR003675.0E-8136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAPLNHQQML IKKALAKKSK TKRISGFGIK PSSTGLLKAK PQLPPATVQP RRRVRVLFED  60
PDATDSDSDD EEPSASVKSK RFSFELFLGK ATPKPVMPAA AVAASTSGGE PESYRGVRLR  120
KWGKWAAEIR NPFTGKRQWL GTFDTAAAAS TAYLTASRSF AEEKRRRRGQ PVAATSSATP  180
SPCTTPTASS SSSTSAAPFA HPSPSSVLET TKPAPKQLSP EPAPTPIPAA TTEPAQLPDD  240
PEFYQDLLRG LQLPDIDPMD FRAGLDALDV SEVPFCLDDE QEDLLLGDLG DEELELDLDL  300
EDMGDIFLDM SGCDLGRGMD DFLQTVDFCV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07025A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968058.11e-151ethylene-responsive transcription factor ERF118
TrEMBLA0A0A9TUH91e-152A0A0A9TUH9_ARUDO; Uncharacterized protein
STRINGSi002186m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-10ERF family protein