PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06885A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 360aa    MW: 39176.5 Da    PI: 8.2954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06885AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-051135123
                               EEETTTTEEESSHHHHHHHHHH..T CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                               +kC  C + F+r ++L+ H+rt  H
  Oropetium_20150105_06885A 11 HKCAACFRQFNRAEHLVEHMRTarH 35
                               79*******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-41133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.051140IPR007087Zinc finger, C2H2
PROSITE patternPS0002801335IPR007087Zinc finger, C2H2
SMARTSM004798.2E-13130304IPR013520Exonuclease, RNase T/DNA polymerase III
Gene3DG3DSA:3.30.420.102.0E-31131305IPR012337Ribonuclease H-like domain
SuperFamilySSF530982.43E-14136301IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDNNSDAHGR HKCAACFRQF NRAEHLVEHM RTARHSSHDP RCAVCGKHCR SFEALRDHLG  60
AGGSSLPKAA HCAAVFAARG CALCLRVFAT AARLGEHHAT CRLARASPPI SMSRLQISGQ  120
GGGGGGGGGG ALALGCKMVG AGSDGSLDVC ARVCLVDERE EIVFETFVKP LVPVTHYRHE  180
RPELLRGGVT VKQAKERVQE LLLDGEQPWK VRSNRGRAMI LVGHGLDHDL AALGMDYPAY  240
LRRDTATYPP LMKTSGLSNS LRFLTRTYLG YDIQTTGGGQ QQHPFEDCVA AMRLYRRMLA  300
QPHRKDGDGG AVSVGADNNA FPAWRQRELE RMAPEELLQL STPDYYCWCL DTVNSQADS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06885A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817977.10.0RNA exonuclease 4-like
TrEMBLA0A2S3HX281e-180A0A2S3HX28_9POAL; Uncharacterized protein
STRINGPavir.Eb00842.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP214655