PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06862A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 333aa MW: 36899.5 Da PI: 6.1018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06862A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.2	6.4e-53	20	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhP+dee+++ yL++kv +++++ ++ ++d++k+ePw+Lp ++ +e+ewyfF+++d+ky+tg r+nrat++gyWk Oropetium_20150105_06862A 20 LPPGFRFHPSDEEIITSYLRPKVLDHNFTS-LAVGDADLNKTEPWELPLIANMGENEWYFFCRNDRKYPTGFRANRATEAGYWK 102 79***********************988.67***********8778899************************* PP NAM 85 atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkdke++++ +++l+g+kktLvfykgrapkg+kt+Wvmheyrl Oropetium_20150105_06862A 103 ATGKDKEIYRSaatESTLIGMKKTLVFYKGRAPKGVKTNWVMHEYRL 149 *****998877788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-58	16	163	IPR003441	NAC domain
PROSITE profile	PS51005	53.553	20	163	IPR003441	NAC domain
Pfam	PF02365	1.0E-28	21	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEDHQPEQQG RIGGANGLEL PPGFRFHPSD EEIITSYLRP KVLDHNFTSL AVGDADLNKT 60 EPWELPLIAN MGENEWYFFC RNDRKYPTGF RANRATEAGY WKATGKDKEI YRSAATESTL 120 IGMKKTLVFY KGRAPKGVKT NWVMHEYRLP NHRVWAVCRV FHKCSSNNNN NNNNAPELTT 180 PASEPANDDM TMGRDSGVDS RSMSFPVPTK FPMESEDFTM DFSAPFYFAD STSPMLPAPS 240 PMVGMDSMLH KMNTGPFVDT MAPTQPMSFY HQVGIGTSSD CNFMAQPDSK PTLMLPGDGR 300 VSPNQTSAAE TSALTTAKPL AATAANIDNI WK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	18	166	15	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	18	166	15	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	18	166	15	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	18	166	15	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	18	166	18	171	NAC domain-containing protein 19
3swm_B	1e-49	18	166	18	171	NAC domain-containing protein 19
3swm_C	1e-49	18	166	18	171	NAC domain-containing protein 19
3swm_D	1e-49	18	166	18	171	NAC domain-containing protein 19
3swp_A	1e-49	18	166	18	171	NAC domain-containing protein 19
3swp_B	1e-49	18	166	18	171	NAC domain-containing protein 19
3swp_C	1e-49	18	166	18	171	NAC domain-containing protein 19
3swp_D	1e-49	18	166	18	171	NAC domain-containing protein 19
4dul_A	1e-49	18	166	15	168	NAC domain-containing protein 19
4dul_B	1e-49	18	166	15	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06862A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679478.1	2e-94	protein CUP-SHAPED COTYLEDON 1
TrEMBL	K3ZUK3	5e-93	K3ZUK3_SETIT; Uncharacterized protein
STRING	Si030284m	9e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-73	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06862A