PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06856A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 218aa    MW: 23746.2 Da    PI: 9.9879
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06856AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.5e-52231601128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeel+v+yL++++++ ++++  vi+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWk
  Oropetium_20150105_06856A  23 LPPGFRFHPTDEELIVHYLRRRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAVFGEGEWYFFSPRDRKYPNGVRPNRAAGSGYWK 105
                                79***************************9.89***************87778899**************************** PP

                        NAM  85 atgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk+++++           +++ +g+kk Lvfykgr pkg+kt+W+mheyrl
  Oropetium_20150105_06856A 106 ATGTDKPITCSaaaaasaaepdRTAMIGVKKALVFYKGRPPKGVKTSWIMHEYRL 160
                                **********9777766666555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5916165IPR003441NAC domain
PROSITE profilePS5100553.60723177IPR003441NAC domain
PfamPF023651.7E-2724160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTIELALAAA PSSSSSAGML SPLPPGFRFH PTDEELIVHY LRRRAAAAPC PAPVIAEVDI  60
YKFDPWDLPA KAVFGEGEWY FFSPRDRKYP NGVRPNRAAG SGYWKATGTD KPITCSAAAA  120
ASAAEPDRTA MIGVKKALVF YKGRPPKGVK TSWIMHEYRL AEALNAANTY RGPVRFKNSS  180
SMRFSSGSSC VDASFGKFPR SMNHFLFPQM LSPMTET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-642316015140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06856A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554201e-152EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816084.13e-92NAC transcription factor 29-like
SwissprotA0SPJ63e-72NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLA0A2S3HX037e-91A0A2S3HX03_9POAL; Uncharacterized protein
STRINGPavir.Ea00837.1.p9e-90(Panicum virgatum)
STRINGPavir.J23256.1.p3e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-63NAC domain containing protein 47
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]