PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06801A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 335aa    MW: 35565.1 Da    PI: 4.3096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06801AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM21.65.7e-07349659128
                        NAM  59 yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv.glkktLvfykgrapkgektdWvmheyrl 128
                                +f++ ++ k     rk   +  g+Wk++ +  +vl+ +ge+v + ++++ + +g+ +      Wvmhey++
  Oropetium_20150105_06801A  34 FFYAYKKGK----ARKCLGAGGGTWKSQRNPSHVLVVDGETVkWNRHIFNYDEGKGS----LGWVMHEYSI 96 
                                444444333....366667889***********999977665055666666655555....57******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-1028103IPR003441NAC domain
PfamPF023651.3E-43096IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGLLDADDQL VDGASTTTME QLQSVDLGKA PVAFFYAYKK GKARKCLGAG GGTWKSQRNP  60
SHVLVVDGET VKWNRHIFNY DEGKGSLGWV MHEYSIASSP EHKILRISFT GYGKMRTRDS  120
DADGGVEPAT KRPRHLQPAA EESDASGSGR TTTTAATQAS ADDDLDPSLL NISDEVMAVA  180
MDLLHSLPDL GSGEEQPVFM VPTVDGATTT TQRTTVDQDV VVVPHNVDYD HFLAGGGESA  240
TTSFITPAAD ESAASSGCTT AAAQCSTDPS LFLWDDMTEV TGQPIDRAST TTTTGQQRVV  300
SEDATPPHVE SSSAATTGTQ NFLTWEGLDY VLTY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06801A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946