PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06732A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 321aa    MW: 33427.1 Da    PI: 4.4917
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06732AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.48.9e-111001312859
                                -STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  28 tsagCpvkkkversaedpkvveitYegeHnhe 59 
                                t ++Cp++k+v+rs++dp+ v++tY++eHnhe
  Oropetium_20150105_06732A 100 TNPECPARKHVDRSSSDPNSVVVTYTDEHNHE 131
                                6789***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081114.58490133IPR003657WRKY domain
SMARTSM007741.1E-498132IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-9101133IPR003657WRKY domain
SuperFamilySSF1182901.44E-7101133IPR003657WRKY domain
PfamPF031062.8E-6102131IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEDDLGWLGG NANNDWDLDA VVRLGSGEPL LAPAPAPADD PFFAHLLEQQ QPQQQHVLPD  60
VGAPAPAPAA ALFLPAPQVP PWLARNEELP QQQEPTQVDT NPECPARKHV DRSSSDPNSV  120
VVTYTDEHNH ELPHTRNVLA GTIRLRGEAL PRQRRAARAE VVGAPSSSSS QAPPPPPVVS  180
NEFDAEEDDD ALAVKALIDS AAMAPENAFL FLKVADNNAP PPASVHHGGQ MATMGIGGGG  240
QMATMGTGGG GNYGGQLFPV PGEVGIGTHS GGTVNWAASG SSGRALPVHN VVVDTTFVSP  300
WEQPAWDAAA AAMAASRRRM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06732A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-10WRKY family protein