PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06693A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 377aa MW: 40346.2 Da PI: 6.5939

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06693A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1e-10	184	242	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l+ l+ l++e+ Oropetium_20150105_06693A 184 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLQLLQRDTTGLTTEN 242 9***********************************************98887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-16	180	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.887	182	245	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-9	184	241	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.06E-11	184	236	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-9	184	239	No hit	No description
CDD	cd14703	4.31E-23	185	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MMSKDKAPML GDGGSSDGLP PQLSRASGAR PKSSTPPPEY DISHMPDFPT RNTGHRRAHS 60 EILSLPDDLD LSAPGGGDGP SLSDENDEEL FSMFLDVDKL NSSCGGLSEA EAESSSAAGG 120 GGEGAGSGQP PRPRHQHSQS MDESMSIKAE ELVGAPGMEG MSPAEAKKAV SAAKLAELAL 180 VDPKRAKRIW ANRQSAARSK ERKMRYIAEL ERKVQTLQTE ATTLSAQLQL LQRDTTGLTT 240 ENSELKIRLQ TMEQQVHLQD ALNDTLRAEV QRLKVAAGQV SNGGGGGMMN FGAMPISFGG 300 NKQMFHNNQA MQSMLATHQM QQLQLHSQAQ QPLHPQLQQQ PLHPLQAQQL QQASRELKMK 360 GPMGQWGDGK SGSTGS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MMSKDKAPML GDGGSSDGLP PQLSRASGAR PKSSTPPPEY DISHMPDFPT RNTGHRRAHS  60
EILSLPDDLD LSAPGGGDGP SLSDENDEEL FSMFLDVDKL NSSCGGLSEA EAESSSAAGG  120
GGEGAGSGQP PRPRHQHSQS MDESMSIKAE ELVGAPGMEG MSPAEAKKAV SAAKLAELAL  180
VDPKRAKRIW ANRQSAARSK ERKMRYIAEL ERKVQTLQTE ATTLSAQLQL LQRDTTGLTT  240
ENSELKIRLQ TMEQQVHLQD ALNDTLRAEV QRLKVAAGQV SNGGGGGMMN FGAMPISFGG  300
NKQMFHNNQA MQSMLATHQM QQLQLHSQAQ QPLHPQLQQQ PLHPLQAQQL QQASRELKMK  360
GPMGQWGDGK SGSTGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06693A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804457.1	0.0	transcription factor RF2a-like
Swissprot	Q69IL4	1e-153	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A2S3H1C7	0.0	A0A2S3H1C7_9POAL; Uncharacterized protein
STRING	Pavir.J04459.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	2e-73	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06693A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]