PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_06656A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22336.4 Da PI: 5.3703 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 127 | 173 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RRd++N +f Lr +P+ +++Ka+ L A YI +L Oropetium_20150105_06656A 127 ASHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYITEL 173 589************************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 124 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-10 | 127 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-15 | 127 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 128 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.25E-12 | 128 | 178 | No hit | No description |
SMART | SM00353 | 9.2E-11 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDELLSPYST FSPPXXXXXX XXXXHAAGHP VIEFAFCEVP EQWLLGDDVV LAKNEEDYYE 60 EVEELWPVAC TLSPFSELSE QPLPPPPXXX XXXXXXLSVV TAAPAAQRPA GKRRGRKPGP 120 RPDGPSASHV EAERQRRDKL NRRFCDLRAA VPTVSRMDKA SLLADAAAYI TELRARVARL 180 EAEAKRASST ATARWDPASS SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 3e-20 | 128 | 183 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_06656A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006525 | 1e-72 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. | |||
GenBank | AP007254 | 1e-72 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. | |||
GenBank | AP014965 | 1e-72 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-72 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462680.1 | 2e-66 | transcription factor MYC2 | ||||
TrEMBL | A0A3L6E3S5 | 8e-66 | A0A3L6E3S5_MAIZE; Transcription factor MYC4 | ||||
STRING | Sb02g030120.1 | 7e-66 | (Sorghum bicolor) | ||||
STRING | GRMZM2G107560_P01 | 5e-66 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 3e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_06656A |