PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06640A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

TCP

Protein Properties

Length: 321aa MW: 33213.2 Da PI: 4.9836

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06640A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.8	2.4e-31	63	138	7	83
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 r ++hTkv+gR+RR+Rl a caar+ L++eLG+++d++ti WL+qq++pai ++tgt++ +a ++ +++ + Oropetium_20150105_06640A 63 RYRDRHTKVEGRGRRIRLAAACAARVARLTRELGHKSDGETIRWLMQQSEPAIVAATGTGTVPAIAT-TVDGVLRLP 138 678********************************************************77777333.222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.176	64	118	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.1E-25	65	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGEDEDMMTF YNAAVNDTAA GVGMDATMGS SEAQGPVLPK PESALVEFLG GGLQVANPRP 60 APRYRDRHTK VEGRGRRIRL AAACAARVAR LTRELGHKSD GETIRWLMQQ SEPAIVAATG 120 TGTVPAIATT VDGVLRLPAE PPTAVSDGDQ QQPVPKRRRK LQPTHAAAAA VATAALVPAA 180 PMAYYPVAAD PLLQGSGGGS ISMSSGLAPV SAATVPPGAI PFLAIPATGP GVTGDGKMMQ 240 PTAMWMVPQQ AGAGGAANQP THYWAFPTNP ELFSNYQQQA ASNAEQVVGG GEPQYQQPAG 300 HQNREREDDD IASTDSSSEE *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06640A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803340.1	1e-132	transcription factor PCF2-like
Swissprot	A2YXQ1	5e-83	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	5e-83	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A2T7EUU1	1e-130	A0A2T7EUU1_9POAL; Uncharacterized protein
STRING	Pavir.Ba01284.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	5e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06640A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]