PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06618A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 825aa    MW: 87365.7 Da    PI: 6.4407
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06618AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.11.1e-21101156156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  Oropetium_20150105_06618A 101 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 156
                                688999***********************************************999 PP
2START163.41.6e-513275604204
                                HHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                      START   4 eeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                                ++a++elvk+ + +ep+W   +     + +n de+ + f++  +     + +ea r+sg+ + ++++lv +l+d + +W+e+++
  Oropetium_20150105_06618A 327 LAAMEELVKLSQMDEPLWLPGPddsglDTLNLDEYHRAFARVLGpspagFVSEATRESGIAITTSVDLVDSLMDAS-RWSEMFP 409
                                789*****************99999**************8766699******************************.******* PP

                                ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..........-TTS--... CS
                      START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..........seqkppe.. 138
                                    +a+t++ issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd          + q++++  
  Oropetium_20150105_06618A 410 civaRAATTDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDavlrpdahhhHHQHQQQng 493
                                ****************************************************************94444444444223333345 PP

                                .-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 139 .sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                  ++++ ++llpSg++++++ ng+skvtwv h+++++  +h+l+r+lv+sg+a ga++w+a lqrqc
  Oropetium_20150105_06618A 494 gAAGYMGCRLLPSGCIVQDMNNGYSKVTWVVHAEYDEVAVHQLYRPLVRSGQALGARRWLASLQRQC 560
                                7899**************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-2284158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-2388158IPR009057Homeodomain-like
PROSITE profilePS5007118.30198158IPR001356Homeobox domain
SMARTSM003898.7E-2099162IPR001356Homeobox domain
PfamPF000463.8E-19101156IPR001356Homeobox domain
CDDcd000866.20E-20101158No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084840.751315565IPR002913START domain
SuperFamilySSF559615.4E-27321560No hitNo description
CDDcd088751.11E-101321560No hitNo description
SMARTSM002341.8E-37324562IPR002913START domain
PfamPF018521.7E-43327560IPR002913START domain
SuperFamilySSF559614.67E-15609814No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MHNPARLIPS PPPIPKPGGG GGFASPGLSL GLQTNMDGGG QLGDVSRLGL MGSGGSGSVG  60
DGDSLGRGRE DENDSRSGSD NLDGASGDEL DPDNANPRKK KKRYHRHTPQ QIQELEAVFK  120
ECPHPDEKQR MELSKRLNLE SRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRADNMT  180
IREAMRNPIC ASCGGTAVLG EVSLEEQHLR IENARLKDEL DRVCALAGKF LGRPVASSGS  240
PASSSLQGCS GLELGVGFGL GPLGASAALP PIVPDLMGGA AAGGLPSPVG GSSLSAMRLP  300
AGLDGCGGGG GGMLGAAERT VLLELGLAAM EELVKLSQMD EPLWLPGPDD SGLDTLNLDE  360
YHRAFARVLG PSPAGFVSEA TRESGIAITT SVDLVDSLMD ASRWSEMFPC IVARAATTDI  420
ISSGMGGTRS GSIQLMHAEL QVLSPLVPIR EVVFLRFCKQ HAEGLWAVVD VSVDAVLRPD  480
AHHHHHQHQQ QNGGAAGYMG CRLLPSGCIV QDMNNGYSKV TWVVHAEYDE VAVHQLYRPL  540
VRSGQALGAR RWLASLQRQC HMLKLAQRMT DNFCAGVCAS AAQKWRRLDE WRQHGGEAGG  600
AGTPEAAEKV RMMARQSVGG PGEPPGVVLS ATTSVRLPAT PPQRVFDYLR DEQRRGDWDI  660
LANGEAMQEM DHIAKGQHHG NAVSLLRPNA TSGNQNNMLI LQETCTDSSG SLVVYAPVDV  720
QSMHVVMNGG DSAYVSLLPS GFAILPDGHS PPPSNPAQFP PANGGGSSSS SSTGGSLVTV  780
AFQILVNSLP TAKLTVESVD TVSNLLSCTI QKIKSALQAS IVSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06618A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509850.0AJ250985.1 Zea mays mRNA for OCL3 protein (ocl3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957413.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA0A1E5V3Q90.0A0A1E5V3Q9_9POAL; Homeobox-leucine zipper protein ROC6
STRINGSi028908m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein