PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_06595A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 162aa MW: 18053.2 Da PI: 6.9464 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.8 | 2.1e-14 | 1 | 39 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k Oropetium_20150105_06595A 1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWK 39 6999**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 102.5 | 3.6e-33 | 1 | 77 | 17 | 93 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +F +++kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L ++l++ Oropetium_20150105_06595A 1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQLEK 77 599999******************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.993 | 1 | 41 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0011 | 1 | 45 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.2E-12 | 1 | 39 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.61E-13 | 2 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-14 | 2 | 48 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.53E-11 | 2 | 42 | No hit | No description |
PRINTS | PR00031 | 8.1E-6 | 12 | 21 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 16 | 39 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-6 | 21 | 37 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.3E-13 | 41 | 83 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MFATQTKLEP RQKLQLARDL GLQPRQVAIW FQNKRARWKS KQLEREYSAL RDDYDALLCS 60 YESLKKEKHA LLKQLEKLAE MLQEPGPNYS GNANAGDDAR KGAGSACMKE EEFSDVVRHA 120 PYSSLEGGAH FADDDSGALF RPSPQPSAAG FTASGPPDHQ PF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_06595A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087258 | 1e-104 | BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462710.1 | 2e-83 | homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q651Z5 | 8e-66 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 8e-66 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | C5X657 | 5e-82 | C5X657_SORBI; Uncharacterized protein | ||||
STRING | Sb02g030660.1 | 8e-83 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-36 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_06595A |
Publications ? help Back to Top | |||
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