PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06454A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 249aa    MW: 28126.6 Da    PI: 4.6662
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06454AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.8e-4961341128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lppGfrFhPtdeelv+           +el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gy
  Oropetium_20150105_06454A   6 LPPGFRFHPTDEELVNXXXXXXXXXXXIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGY 88 
                                79**************99999999999999.99**************85335566888************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wk+tgkd++vl+++g+++g+kktLv+y+grap+g++tdWvmheyr+
  Oropetium_20150105_06454A  89 WKSTGKDRRVLHHGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRI 134
                                ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-583158IPR003441NAC domain
PROSITE profilePS5100555.6066157IPR003441NAC domain
PfamPF023651.1E-237134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARVGLPPGF RFHPTDEELV NXXXXXXXXX XXIELDIIPE VDLYKCEPWE LADKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVLH HGGRAIGMKK TLVYYRGRAP  120
QGVRTDWVMH EYRIDDKDAE DTLPIQDTYA LCRVFKKNAI CTEVDDHQLQ AQCSLALLEG  180
ACQQQLLPSG RQEYETPSPD VPVGSTSGGA DEDADKDESW MQFISDDAWC SSTADGTEES  240
TSCVALAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-48115915170NAC domain-containing protein 19
3swm_B4e-48115915170NAC domain-containing protein 19
3swm_C4e-48115915170NAC domain-containing protein 19
3swm_D4e-48115915170NAC domain-containing protein 19
3swp_A4e-48115915170NAC domain-containing protein 19
3swp_B4e-48115915170NAC domain-containing protein 19
3swp_C4e-48115915170NAC domain-containing protein 19
3swp_D4e-48115915170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06454A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280590.0KJ728059.1 Zea mays clone pUT6205 NAC transcription factor (NAC121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803496.11e-163NAC domain-containing protein 86-like
SwissprotQ9FFI53e-73NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A2S3H2331e-161A0A2S3H233_9POAL; Uncharacterized protein
TrEMBLA0A2T7EVM31e-161A0A2T7EVM3_9POAL; Uncharacterized protein
STRINGPavir.Bb02627.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-110NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]