PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06453A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 217aa MW: 24954.9 Da PI: 8.4361

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06453A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.4	6.8e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L k + ++++ewyfF +rd+ky++g r+nrat++gy Oropetium_20150105_06453A 6 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDSEWYFFGPRDRKYPNGCRTNRATRAGY 88 79**************************.99**********84335566899********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tgkd++v +++ +g+kktLv+ykgrap+g +t Wvmheyr+ Oropetium_20150105_06453A 89 WKSTGKDRRVSY-QNRSIGMKKTLVYYKGRAPQGLRTGWVMHEYRI 133 *******9.8899*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.207	6	156	IPR003441	NAC domain
Pfam	PF02365	5.9E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAPADLPPGF RFHPTDEELV NYYLKRKVHG LSIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DSEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRRVSY QNRSIGMKKT LVYYKGRAPQ 120 GLRTGWVMHE YRIEESECDN TMGIQDSYAL CRVFKKNVAF SEIEKQGECS TSKAKGNQEQ 180 PANFGDAGQS SGSNEQSKDN SWMQFIADDL WSNKTK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	6	157	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	6	157	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	6	157	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	6	157	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-54	6	157	20	169	NAC domain-containing protein 19
3swm_B	3e-54	6	157	20	169	NAC domain-containing protein 19
3swm_C	3e-54	6	157	20	169	NAC domain-containing protein 19
3swm_D	3e-54	6	157	20	169	NAC domain-containing protein 19
3swp_A	3e-54	6	157	20	169	NAC domain-containing protein 19
3swp_B	3e-54	6	157	20	169	NAC domain-containing protein 19
3swp_C	3e-54	6	157	20	169	NAC domain-containing protein 19
3swp_D	3e-54	6	157	20	169	NAC domain-containing protein 19
4dul_A	3e-54	6	157	17	166	NAC domain-containing protein 19
4dul_B	3e-54	6	157	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06453A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803497.1	1e-145	NAC domain-containing protein 45-like
Swissprot	Q9FFI5	3e-89	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0A9HWW6	1e-150	A0A0A9HWW6_ARUDO; NAC017
STRING	Pavir.Bb02626.1.p	1e-145	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-110	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06453A

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]