PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_06336A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NF-YB | ||||||||
Protein Properties | Length: 195aa MW: 21744.7 Da PI: 4.7032 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 46.4 | 9.7e-15 | 38 | 128 | 7 | 90 |
NF-YB 7 flPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 +lP a v r++k l a+ + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl Oropetium_20150105_06336A 38 ELPKAIVRRLVKDKLAhiaggegAEVIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEIEFSEFVEPL 121 68999999999988862222211344589******************************************************* PP NF-YB 84 kvylkky 90 ++ l+ + Oropetium_20150105_06336A 122 RTSLQAF 128 *999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-27 | 37 | 128 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.1E-10 | 38 | 109 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 7.29E-22 | 39 | 128 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEGEATKESE PQPQATQVQD QDKPAPXXXX XXXXXXXELP KAIVRRLVKD KLAHIAGGEG 60 AEVIVNKDAM AAFAESARIF IHYLSATAND MCKESKRQTI NADDVLKALD EIEFSEFVEP 120 LRTSLQAFVT ELIFGSSDLI FSFALNFLVP EFRNKNAGKR SEANKKQKEK RRKLNEETLS 180 QKENDPADDP ENGD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_06336A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310236.1 | 4e-76 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0A9DZ16 | 9e-75 | A0A0A9DZ16_ARUDO; Uncharacterized protein | ||||
TrEMBL | C5X5Y5 | 1e-74 | C5X5Y5_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Bb01701.1.p | 4e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 6e-34 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_06336A |