PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06329A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family BES1
Protein Properties Length: 576aa    MW: 65266.8 Da    PI: 6.6501
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06329AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822115.95.9e-36678476
                     DUF822  4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76
                               gr     E+E++k+RER+RRa++ +i+aGLR++Gny l++raD+neV++AL+reAGwvv +DGtt++ +++  
  Oropetium_20150105_06329A  6 GRYLLSPEKERTKLRERQRRAVTGRILAGLRQHGNYSLRARADINEVIAALAREAGWVVLPDGTTFPSSTSSS 78
                               5555667************************************************************887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.5E-321179IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.34E-184130571IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.2E-202133569IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.5E-111139560IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-73170184IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-73191209IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-73213234IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060217225IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008425.9E-9296305IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.2E-73306328IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-73384403IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-73418434IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-73435446IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-73453476IPR001554Glycoside hydrolase, family 14
PRINTSPR008425.9E-9456466IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.2E-73490512IPR001554Glycoside hydrolase, family 14
PRINTSPR008425.9E-9541555IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008425.9E-9556570IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDDAAGRYLL SPEKERTKLR ERQRRAVTGR ILAGLRQHGN YSLRARADIN EVIAALAREA  60
GWVVLPDGTT FPSSTSSSAQ VRFARYPFSL VPLPPRFASS AEDRLPGSGS SARRTRRVVE  120
VAPRPPERDF AGTPYVPVYV MLPLNVVNAN GEVVDADELV GQLRVLKAAG VDGVMVDCWW  180
GIVEASRPQE YNWTGYKRLF QMIRELKLKL QVVMSFHECG GNVGDDVSIP LPHWVTEIGR  240
SNPDIYFTDR AGRRNTECLS WGIDKERVLQ GRTAVEVYFD FMRSFRVEFD EYFEDGIISE  300
IEVGLGACGE LRYPSYPAKH GWKYPGIGEF QRILFQCYDR YLQKNLRKAA EARGHTIWAR  360
GPDNAGHYNS EPNLTGFFCD GGDYDSYYGR FFLNWYSQTL VDHADRVLML ARLAFEGSNI  420
AVKVSGVHWW YKTASHAAEL TAGFYNPCNR DGYAPIAAVL KKYDAALNFT CVELRTMDQH  480
EVYPEAFADP EGLVLNDAWD AGIQVASENA LPCYDRDGFN KILENAKPRN DPDGRHLFGF  540
TYLRLSKVLF ERQNFFEFER FVKRMHGEAV LDLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-15913556811444BETA-AMYLASE
1bya_A1e-15913556811444BETA-AMYLASE
1byb_A1e-15913556811444BETA-AMYLASE
1byc_A1e-15913556811444BETA-AMYLASE
1byd_A1e-15913556811444BETA-AMYLASE
1q6c_A1e-15913556811444beta-amylase
1wdp_A1e-15913556811444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06329A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459849.20.0beta-amylase 2, chloroplastic
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLK3ZQS70.0K3ZQS7_SETIT; Beta-amylase
STRINGPavir.Bb01698.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]