PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06317A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 337aa    MW: 36252.6 Da    PI: 10.2377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06317AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.95.7e-08284328248
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 
                                 pG+rF+P+ +e++  +L+ k  g+++++ ++++++++y+++P++  
  Oropetium_20150105_06317A 284 VPGVRFRPKKKEII-WFLRMKYLGRRMPV-DFFRDANVYEAHPQNVT 328
                                59************.99************.99************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-8282331IPR003441NAC domain
PROSITE profilePS510059.874283336IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MFRIWSIDSR HRAASFSSRE RSTDADDIAR RADAASGRGR RRGCVGDVRL EEKGERTEGG  60
EKVGSGAPGH GHRRQRKFSA AAAEAAALGF GQQQLLHQVG GGILTDNNNY DDFYVAMSAN  120
FPLLRPASAH LPQADVSPQP QVVAQASYPI SHHEAMVAAV AAPAPQAEKA GPLAAVAAPA  180
PPADETVPLA TVAAPPRRRG RPRKNIAAAT SSGNKRKKAL NDSEAGTSSS SCHHQARRQD  240
PESSIAAGTG SNSSSDPPVC EWEREAWMVH LEEAMAGSFA DTKVPGVRFR PKKKEIIWFL  300
RMKYLGRRMP VDFFRDANVY EAHPQNVTGK FTIFAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196217RRRGRPRKNIAAATSSGNKRKK
2197203RRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06317A