PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06297A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 240aa    MW: 27111.8 Da    PI: 4.2006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06297AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.61.9e-1357658128
                        NAM  58 wyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 y Fs+r ++y  g r+ r +   g+Wk+  k+++++  +++++g+ ++L+f  g++p+g +t W m+ey++
  Oropetium_20150105_06297A   5 RYVFSPRMRRYLFGGRPARgVEGVGFWKSNTKETDIVLDDNTVIGTVTSLTFELGHQPHGIQTPWKMKEYSV 76 
                                599****************88889**************9*******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.4221101IPR003441NAC domain
SuperFamilySSF1019413.01E-193101IPR003441NAC domain
PfamPF023655.8E-5676IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDGYRYVFSP RMRRYLFGGR PARGVEGVGF WKSNTKETDI VLDDNTVIGT VTSLTFELGH  60
QPHGIQTPWK MKEYSVPEKR YSCNGLNMRL DDWVLCKIYY RGNGHDDTDL PRILAEHDDI  120
DKDTDVPEEY EDGMTVEQGD EQANTADEGV GEVEVDSNTQ IMRVDWSLSN FEEDLSVDDY  180
IVHDGSNIFK CGVICGDLHE HYLPVNILSA SASVEEGHNE LQIHGQSLEK DIKDSTEEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-1569974163NO APICAL MERISTEM PROTEIN
1ut4_B7e-1569974163NO APICAL MERISTEM PROTEIN
1ut7_A7e-1569974163NO APICAL MERISTEM PROTEIN
1ut7_B7e-1569974163NO APICAL MERISTEM PROTEIN
4dul_A7e-1569974163NAC domain-containing protein 19
4dul_B7e-1569974163NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06297A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.13e-17NAC domain containing protein 2