PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_06291A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 38337.5 Da PI: 7.0729 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl Oropetium_20150105_06291A 14 KGPWSPEEDRKLKDYIHKNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Oropetium_20150105_06291A 69 GDFSEDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 689******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.096 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.083 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDRKLKDYIH KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSEDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMQA 120 HGLHPTTHRH RRSKKQQQQS LFFSTEEEAP SPAPLALTLA DPCLSLQYLS TSAHNFTHQY 180 GGHDDSTSTT SSLLCAGGGL MFGGINNGDG EQHVMSSSAG SDSVAGGLGL YFEFCNNGGG 240 SGSHGHDDDD HSAAAVAVAA GLAVESFVLR DDDHHNNKAP LLLAAGPETS LDYYQYGADT 300 SYGYDEEAAA AKPFAPAGGG GGSSSAFFEF YGYSQEKSGS SCPAVAGVCQ QRRFMY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_06291A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956269.1 | 7e-96 | myb-related protein Hv1 | ||||
TrEMBL | A0A2S3GXU5 | 1e-100 | A0A2S3GXU5_9POAL; Uncharacterized protein | ||||
STRING | Si030544m | 3e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-74 | myb domain protein 36 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_06291A |